公海彩船: 课题组长
姓名:
Hisashi Tadakuma助理教授 研究员 博士生导师, PhD, 助理教授
职务:
所在院所:
公海彩船
荣誉称号:
教育经历:
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1991/04—1995/03,日本早稻田大学,学士
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1995/04—1997/03,日本早稻田大学,硕士
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1997/04—2001/03,日本早稻田大学,博士课程
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2004/03—2004/03,日本早稻田大学,博士
博士后及工作经历:
- 2001—2003,Waseda University, Takashi Funatsu lab,Assistant Professor
- 2003—2008,University of Tokyo, Michio Tomishige lab,Assistant Professor
- 2008—2010,University of Tokyo, Takuya Ueda / Hideki Taguchi lab,Postdoc
- 2010—2014/12,University of Tokyo, Takuya Ueda lab,Assistant Professor
- 2015/01—2016,Kyoto University, Yoshie Harada lab,Postdoct
- 2016—2019,Osaka University, Yoshie Harada lab,Assistant Professor
- 2019/11—至今,上海科技大学,公海彩船,助理教授 (TENURE-TRACK)
公海彩船: 课题组简介
研究方向:
以合成生物学和生物物理学为基础的纳米生物学
研究内容:
转录是基因表达的第一步,因此非常重要。本课题组致力于构建独特的纳米芯片,阐明转录机制和细胞命运调控模式,开发新的精确控制细胞命运的手段。
公海彩船: 研究成果展示
In synthetic biology, the control of gene expression requires a multistep processing of biological signals. The key steps are sensing the environment, computing information and outputting products. To achieve such functions, the laborious, combinational networking of enzymes and substrate-genes is required, and to resolve problems, sophisticated design automation tools have been introduced. However, the complexity of genetic circuits remains low because it is difficult to completely avoid crosstalk between the circuits. To overcome these problems, we have combined a synthetic biology approach (EMBO J. 2010) and a biophysical approach (Nature 2015, Mol Cell 2015, 2018, 2019), making a unique nano-chip by integrating an actuator (enzyme) and sensors onto a DNA origami-based nanochip (Nature Nanotechnology 2018). This gene nanochip allows us to rationally design the chemical reaction and precise gene expression control in vitro and in vivo. Our approach to component integration on a nanochip may provide a basis for large-scale, integrated genetic circuits.
公海彩船: 代表性论文(*第一作者,#通讯作者)
- 1. Liu YX(刘宇翔)*; Wang RX(王瑞璇)*; 陈启明星; Chang Y(常艳); Chen Q(陈琦); Fukumoto Kodai; Wang BX(王柄巽); Yu JC(俞健晨); Luo ZF(罗长峰); Ma JY(马家媛); Chen XX(陈晓霞); Murayama Yuko; Umeda Kenichi; Kodera Noriyuki; Harada Yoshie; Sekine Shun-ichi; Li JF(李剑峰)#; Tadakuma Hisashi#; .Organ-specific gene expression control using DNA origami-based nanodevices.NANO LETTERS. 公海彩船.
- 2. Iinuma, Ryosuke*; Chen, Xiaoxia; Masubuchi, Takeya; Ueda, Takuya; Tadakuma, Hisashi#; .Size-Selective Capturing of Exosomes Using DNA Tripods.JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. 03 Apr 公海彩船. 146(15):10293-10298.
- 3. Fukumoto, Kodai*; Miyazono, Yuya; Ueda, Takuya; Harada, Yoshie#; Tadakuma, Hisashi#; .Evaluating the effect of two-dimensional molecular layout on DNA origami-based transporters.NANOSCALE ADVANCES. 19 Apr 公海彩船. 5(9):2590-2601.
- 4. Shuting Shen*; Masahiro Naganuma*; Yukihide Tomari; Hisashi Tadakuma#; .Revisiting the Glass Treatment for Single-Molecule Analysis of ncRNA Function.METHODS IN MOLECULAR BIOLOGY. 08 Jul 2022. 2509:209-231.
- 5. Abdellatef, Shimaa A.*; Tadakuma, Hisashi; Yan, Kangmin; Fujiwara, Takashi; Fukumoto, Kodai; Kondo, Yuichi; Takazaki, Hiroko; Boudria, Rofia; Yasunaga, Takuo; Higuchi, Hideo; Hirose, Keiko#; .Oscillatory movement of a dynein-microtubule complex crosslinked with DNA origami.ELIFE. 24 Jun 2022. 11:e76357.
- 6. Masahiro Naganuma*; Hisashi Tadakuma#; Yukihide Tomari#; .Single-molecule analysis of processive double-stranded RNA cleavage by Drosophila Dicer-2.NATURE COMMUNICATIONS. 13 Jul 2021. 12:4268.
- 7. Ivana Duic*; Hisashi Tadakuma; Yoshie Harada; Ryo Yamaue; Katashi Deguchi; Yuki Suzuki; Shige H. Yoshimura; Hiroki Kato; Kunio Takeyasu; Takashi Fujita#; .Viral RNA recognition by LGP2 and MDA5, and activation of signaling through step-by-step conformational changes.NUCLEIC ACIDS RESEARCH. 18 Nov 2020. 48(20):11664-11674.
- 8. Yokoyama, Takeshi*; Machida, Kodai*; Iwasaki, Wakana*; Shigeta, Tomoaki; Nishimoto, Madoka; Takahashi, Mari; Sakamoto, Ayako; Yonemochi, Mayumi; Harada, Yoshie; Shigematsu, Hideki; Shirouzu, Mikako; Tadakuma, Hisashi#; Imataka, Hiroaki#; Ito, Takuhiro#; .HCV IRES Captures an Actively Translating 80S Ribosome.MOLECULAR CELL. 2019. 74(6):1205+.
- 9. Masubuchi, Takeya*; Endo, Masayuki#; Iizuka, Ryo; Iguchi, Ayaka; Yoon, Dong Hyun; Sekiguchi, Tetsushi; Qi, Hao; Iinuma, Ryosuke; Miyazono, Yuya; Shoji, Shuichi; Funatsu, Takashi; Sugiyama, Hiroshi#; Harada, Yoshie; Ueda, Takuya#; Tadakuma, Hisashi#; .Construction of integrated gene logic-chip.NATURE NANOTECHNOLOGY. 2018. 13(10):933+.
- 10. Tsuboyama, Kotaro*; Tadakuma, Hisashi#; Tomari, Yukihide#; .Conformational Activation of Argonaute by Distinct yet Coordinated Actions of the Hsp70 and Hsp90 Chaperone Systems.MOLECULAR CELL. 2018. 70(4):722+.
- 11. Tadakuma, Hisashi#*; Masubuchi, Takeya; Ueda, Takuya; .RNA Study Using DNA Nanotechnology.PROGRESS IN MOLECULAR BIOLOGY AND TRANSLATIONAL SCIENCE. 2016. 139:121-163.
- 12. Yao, Chunyan*; Sasaki, Hiroshi M.; Ueda, Takuya; Tomari, Yukihide#; Tadakuma, Hisashi#; .Single-Molecule Analysis of the Target Cleavage Reaction by the Drosophila RNAi Enzyme Complex.MOLECULAR CELL. 2015. 59(1):125-132.
- 13. Iwasaki, Shintaro*; Sasaki, Hiroshi M.*; Sakaguchi, Yuriko; Suzuki, Tsutomu; Tadakuma, Hisashi#; Tomari, Yukihide#; .Defining fundamental steps in the assembly of the Drosophila RNAi enzyme complex.NATURE. 2015. 521(7553):533-U274.
- 14. Miyazono, Yuya*; Hayashi, Masahito; Karagiannis, Peter; Harada, Yoshie; Tadakuma, Hisashi#; .Strain through the neck linker ensures processive runs: a DNA-kinesin hybrid nanomachine study.EMBO JOURNAL. 2010. 29(1):93-106.
公海彩船: 课题组成员及合影
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姓名:王瑞璇
身份:博士研究生
在组时间:2020/03-至今
邮箱:wangrx@@shanghaitech
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姓名:罗长峰
身份:博士研究生
在组时间:2021/01-至今
邮箱:luochf@@shanghaitech
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姓名:王柄巽
身份:博士研究生
在组时间:2021/01-至今
邮箱:wangbx1@@shanghaitech
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姓名:宋成林
身份:博士研究生
在组时间:2022/08-至今
邮箱:songchl@@shanghaitech
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姓名:俞健晨
身份:博士研究生
在组时间:2022/01-至今
邮箱:yujch@@shanghaitech
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姓名:黄佩琪
身份:博士研究生
在组时间:2022/01-至今
邮箱:huangpq@@shanghaitech
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姓名:谭晨旭
身份:博士研究生
在组时间:公海彩船/1-至今
邮箱:tanchx2022@@shanghaitech
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姓名:张文悦
身份:硕士研究生
在组时间:2021/09-至今
邮箱:zhangwy@@shanghaitech
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姓名:宋元哲
身份:本科生
在组时间:2021/06-至今
邮箱:songyzh1@@shanghaitech
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姓名:王洁琳
身份:本科生
在组时间:2022/02-至今
邮箱:wangjl3@@shanghaitech
alumni: 2021/07 寻东民(本科生, CAS) 公海彩船/06 陈琦(硕士, 无锡佰翱得生物科学股份(Biorutus)), 郑云思( 本科生, 上科大学张尚敏組) 公海彩船/03 陈晓霞(助理研究员, 浙江大学附属第一医院) 公海彩船/07 刘宇翔(博士, 上海市), 马家媛(硕士,上海旭东海普药业有限公司(远大医药G)), 李宗浩(硕士,中国铁路北京局集团有限公司), 王恺君(本科生, 西湖大学)
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